STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100186389Transmembrane protein 214-A. (674 aa)    
Predicted Functional Partners:
LOC100179323
J domain-containing protein.
   
 
 0.667
H2XN70_CIOIN
Uncharacterized protein.
      
 0.537
F6Z5N9_CIOIN
Rhomboid domain-containing protein.
      
 0.529
F6X1E1_CIOIN
UPF0020 domain-containing protein.
      
 0.514
F6YN96_CIOIN
3'-5' exonuclease domain-containing protein.
      
 0.505
F6ZM86_CIOIN
Plug_translocon domain-containing protein.
   
  
 0.479
LOC100183132
Uncharacterized protein.
   
  
 0.457
LOC100175466
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.447
F6ZS78_CIOIN
Uncharacterized protein.
      
 0.441
LOC108950015
Mitochondrial inner membrane protease subunit 2-like.
      
 0.405
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.