Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176842Uncharacterized protein LOC100176842 isoform X2. (222 aa)    
Predicted Functional Partners:
LOC100179166
Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.
 
 0.999
F6RT01_CIOIN
Uncharacterized protein.
    
 0.960
LOC100178162
Pyridoxal kinase-like.
    
 0.957
F6V377_CIOIN
Lipase_GDSL domain-containing protein.
  
 0.946
H2XSN9_CIOIN
Uncharacterized protein.
     
  0.900
LOC100176649
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
    
  0.839
F6ZG04_CIOIN
PfkB domain-containing protein.
     
 0.831
F6VUM2_CIOIN
Glutamine synthetase.
    
 0.805
LOC100185905
Uncharacterized protein.
     
 0.801
F6ZDC7_CIOIN
Uncharacterized protein; Belongs to the phosphohexose mutase family.
     
  0.800
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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