STRINGSTRING
ENSCING00000006376 protein (Ciona intestinalis) - STRING interaction network
"ENSCING00000006376" - Zn-finger in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCING00000006376Zn-finger (U1-like)-1 (223 aa)    
Predicted Functional Partners:
ENSCING00000009501
Uncharacterized protein (213 aa)
       
  0.756
ENSCING00000008242
Uncharacterized protein (815 aa)
     
  0.725
ENSCING00000008526
Uncharacterized protein (784 aa)
       
    0.716
U1C
U1 small nuclear ribonucleoprotein C ; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region (122 aa)
         
  0.711
ENSCING00000016042
Uncharacterized protein (167 aa)
       
  0.708
ENSCING00000021005
Uncharacterized protein (535 aa)
         
  0.708
ENSCING00000021276
Uncharacterized protein (472 aa)
       
  0.704
ENSCING00000002730
Uncharacterized protein (502 aa)
     
  0.675
ENSCING00000006015
Uncharacterized protein (461 aa)
     
  0.671
sf3b1
Uncharacterized protein (898 aa)
     
  0.666
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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