STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zf(u1like)-1U1-type domain-containing protein. (223 aa)    
Predicted Functional Partners:
LOC100178781
Small nuclear ribonucleoprotein-associated protein B-like.
    
 
 0.853
LOC100176481
U1-type domain-containing protein.
   
 0.849
F6XM64_CIOIN
NOSIC domain-containing protein.
    
 0.849
LOC100176960
Uncharacterized protein.
    
 
 0.847
F6ZP02_CIOIN
Uncharacterized protein.
   
 0.840
F7AAC1_CIOIN
MFAP1 domain-containing protein.
   
 0.837
LOC100180093
WD40 repeat-containing protein SMU1.
    
 0.799
LOC100176856
Uncharacterized protein.
    
 0.791
LOC100181225
U6 snRNA-associated Sm-like protein LSm6.
    
 0.783
F7A771_CIOIN
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.781
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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