STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6QSH0_CIOINUncharacterized protein. (709 aa)    
Predicted Functional Partners:
LOC100180482
Structural maintenance of chromosomes protein.
   
 0.999
F7ADN1_CIOIN
Structural maintenance of chromosomes protein.
   
 0.999
LOC100176733
Cnd3 domain-containing protein.
   
 0.999
F6PWP3_CIOIN
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.
   
 0.993
H2XS59_CIOIN
Cnd1_N domain-containing protein.
   
 0.979
LOC100181789
AAA_23 domain-containing protein.
   
 0.872
F6WUJ1_CIOIN
Structural maintenance of chromosomes protein.
   
 0.864
H2XWH9_CIOIN
Protein kinase domain-containing protein.
   
  
 0.856
F6XGL3_CIOIN
Non-specific serine/threonine protein kinase.
   
  
 0.843
H2XSB0_CIOIN
Uncharacterized protein.
   
 0.836
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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