Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6QQX7_CIOINUncharacterized protein. (1172 aa)    
Predicted Functional Partners:
LOC778910
ANK_REP_REGION domain-containing protein.
    
 
 0.559
Nr1
Uncharacterized protein.
   
  
 0.541
F6TAV4_CIOIN
RING-type domain-containing protein.
   
 
 0.534
F6YHB0_CIOIN
Uncharacterized protein; Belongs to the AAA ATPase family.
      
 0.516
F6Z3D0_CIOIN
Uncharacterized protein; Belongs to the peptidase C1 family.
      
 0.509
LOC100180463
Uncharacterized protein.
      
 0.508
H2XLC8_CIOIN
Uncharacterized protein.
    
 
 0.500
F7APX0_CIOIN
Uncharacterized protein.
    
 0.497
LOC100180225
Lissencephaly-1 homolog; Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.
    
 0.453
F6YYY1_CIOIN
Uncharacterized protein.
   
  
 0.439
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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