F6QKM5_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6QKM5_CIOIN

Mago-bind domain-containing protein. (209 aa)

Predicted Functional Partners:

LOC100185146

0.998

LOC100184300

0.996

H2Y3Q2_CIOIN

0.993

F6XF93_CIOIN

0.953

F6XWK4_CIOIN

0.917

LOC100175053

0.900

F6XS77_CIOIN

0.807

F7A6K5_CIOIN

0.547

H2XQK9_CIOIN

0.532

F6R2U8_CIOIN

0.506

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QKM5_CIOIN	F6R2U8_CIOIN	ENSCINP00000013273	ENSCINP00000018043	Mago-bind domain-containing protein.	MI domain-containing protein.	0.506
F6QKM5_CIOIN	F6XF93_CIOIN	ENSCINP00000013273	ENSCINP00000016005	Mago-bind domain-containing protein.	Uncharacterized protein.	0.953
F6QKM5_CIOIN	F6XS77_CIOIN	ENSCINP00000013273	ENSCINP00000017124	Mago-bind domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.807
F6QKM5_CIOIN	F6XWK4_CIOIN	ENSCINP00000013273	ENSCINP00000027327	Mago-bind domain-containing protein.	PKS_ER domain-containing protein.	0.917
F6QKM5_CIOIN	F7A6K5_CIOIN	ENSCINP00000013273	ENSCINP00000010189	Mago-bind domain-containing protein.	Uncharacterized protein.	0.547
F6QKM5_CIOIN	H2XQK9_CIOIN	ENSCINP00000013273	ENSCINP00000031943	Mago-bind domain-containing protein.	Uncharacterized protein.	0.532
F6QKM5_CIOIN	H2Y3Q2_CIOIN	ENSCINP00000013273	ENSCINP00000036537	Mago-bind domain-containing protein.	Btz domain-containing protein.	0.993
F6QKM5_CIOIN	LOC100175053	ENSCINP00000013273	ENSCINP00000012516	Mago-bind domain-containing protein.	Uncharacterized protein LOC100175053.	0.900
F6QKM5_CIOIN	LOC100184300	ENSCINP00000013273	ENSCINP00000005510	Mago-bind domain-containing protein.	Uncharacterized protein.	0.996
F6QKM5_CIOIN	LOC100185146	ENSCINP00000013273	ENSCINP00000010079	Mago-bind domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.998
F6R2U8_CIOIN	F6QKM5_CIOIN	ENSCINP00000018043	ENSCINP00000013273	MI domain-containing protein.	Mago-bind domain-containing protein.	0.506
F6R2U8_CIOIN	F6XF93_CIOIN	ENSCINP00000018043	ENSCINP00000016005	MI domain-containing protein.	Uncharacterized protein.	0.991
F6R2U8_CIOIN	F6XS77_CIOIN	ENSCINP00000018043	ENSCINP00000017124	MI domain-containing protein.	Smg4_UPF3 domain-containing protein.	0.907
F6R2U8_CIOIN	H2Y3Q2_CIOIN	ENSCINP00000018043	ENSCINP00000036537	MI domain-containing protein.	Btz domain-containing protein.	0.724
F6R2U8_CIOIN	LOC100184300	ENSCINP00000018043	ENSCINP00000005510	MI domain-containing protein.	Uncharacterized protein.	0.800
F6R2U8_CIOIN	LOC100185146	ENSCINP00000018043	ENSCINP00000010079	MI domain-containing protein.	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	0.721
F6XF93_CIOIN	F6QKM5_CIOIN	ENSCINP00000016005	ENSCINP00000013273	Uncharacterized protein.	Mago-bind domain-containing protein.	0.953
F6XF93_CIOIN	F6R2U8_CIOIN	ENSCINP00000016005	ENSCINP00000018043	Uncharacterized protein.	MI domain-containing protein.	0.991
F6XF93_CIOIN	F6XS77_CIOIN	ENSCINP00000016005	ENSCINP00000017124	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.988
F6XF93_CIOIN	H2XQK9_CIOIN	ENSCINP00000016005	ENSCINP00000031943	Uncharacterized protein.	Uncharacterized protein.	0.993