Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177099Protein NRDE2 homolog. (935 aa)    
Predicted Functional Partners:
stip
Sip1/TFIP11 interacting protein.
   
 
 0.902
LOC100182540
Uncharacterized protein.
    
 
 0.881
LOC100184230
G-patch domain-containing protein.
   
 
 0.868
F6SFA7_CIOIN
Uncharacterized protein.
    
 
 0.864
F6UJI9_CIOIN
Uncharacterized protein.
    
 
 0.864
F6U3G5_CIOIN
Uncharacterized protein.
      
 0.818
LOC100183745
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
      
 0.810
LOC100181072
Microtubule-associated protein RP/EB family member 1 isoform X4.
    
 
 0.767
H2Y1V8_CIOIN
Uncharacterized protein.
      
 0.752
F6TMW1_CIOIN
TYR_PHOSPHATASE_2 domain-containing protein.
    
 
 0.715
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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