hb3 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

hb3

GLOBIN domain-containing protein; Belongs to the globin family. (153 aa)

Predicted Functional Partners:

F6VW94_CIOIN

0.891

H2XR46_CIOIN

0.840

ci-vp-r

0.827

LOC100183005

0.743

LOC100176359

0.720

F6T1X5_CIOIN

0.718

ciad70l24

0.712

F6UKS5_CIOIN

0.709

F6WUP8_CIOIN

0.709

LOC100178591

0.659

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6T1X5_CIOIN	H2XR46_CIOIN	ENSCINP00000017586	ENSCINP00000032130	Uncharacterized protein.	Uncharacterized protein.	0.527
F6T1X5_CIOIN	LOC100178591	ENSCINP00000017586	ENSCINP00000004523	Uncharacterized protein.	Guanylate cyclase soluble subunit alpha-2 isoform X2; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.647
F6T1X5_CIOIN	LOC100183005	ENSCINP00000017586	ENSCINP00000015553	Uncharacterized protein.	Neuroglobin-like; Belongs to the globin family.	0.589
F6T1X5_CIOIN	hb3	ENSCINP00000017586	ENSCINP00000013341	Uncharacterized protein.	GLOBIN domain-containing protein; Belongs to the globin family.	0.718
F6UKS5_CIOIN	F6VW94_CIOIN	ENSCINP00000015199	ENSCINP00000027679	Uncharacterized protein; Belongs to the DOCK family.	PH domain-containing protein.	0.963
F6UKS5_CIOIN	F6WUP8_CIOIN	ENSCINP00000015199	ENSCINP00000019638	Uncharacterized protein; Belongs to the DOCK family.	DHR-2 domain-containing protein; Belongs to the DOCK family.	0.928
F6UKS5_CIOIN	hb3	ENSCINP00000015199	ENSCINP00000013341	Uncharacterized protein; Belongs to the DOCK family.	GLOBIN domain-containing protein; Belongs to the globin family.	0.709
F6VW94_CIOIN	F6UKS5_CIOIN	ENSCINP00000027679	ENSCINP00000015199	PH domain-containing protein.	Uncharacterized protein; Belongs to the DOCK family.	0.963
F6VW94_CIOIN	F6WUP8_CIOIN	ENSCINP00000027679	ENSCINP00000019638	PH domain-containing protein.	DHR-2 domain-containing protein; Belongs to the DOCK family.	0.963
F6VW94_CIOIN	LOC100183005	ENSCINP00000027679	ENSCINP00000015553	PH domain-containing protein.	Neuroglobin-like; Belongs to the globin family.	0.461
F6VW94_CIOIN	hb3	ENSCINP00000027679	ENSCINP00000013341	PH domain-containing protein.	GLOBIN domain-containing protein; Belongs to the globin family.	0.891
F6WUP8_CIOIN	F6UKS5_CIOIN	ENSCINP00000019638	ENSCINP00000015199	DHR-2 domain-containing protein; Belongs to the DOCK family.	Uncharacterized protein; Belongs to the DOCK family.	0.928
F6WUP8_CIOIN	F6VW94_CIOIN	ENSCINP00000019638	ENSCINP00000027679	DHR-2 domain-containing protein; Belongs to the DOCK family.	PH domain-containing protein.	0.963
F6WUP8_CIOIN	hb3	ENSCINP00000019638	ENSCINP00000013341	DHR-2 domain-containing protein; Belongs to the DOCK family.	GLOBIN domain-containing protein; Belongs to the globin family.	0.709
H2XR46_CIOIN	F6T1X5_CIOIN	ENSCINP00000032130	ENSCINP00000017586	Uncharacterized protein.	Uncharacterized protein.	0.527
H2XR46_CIOIN	LOC100178591	ENSCINP00000032130	ENSCINP00000004523	Uncharacterized protein.	Guanylate cyclase soluble subunit alpha-2 isoform X2; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.	0.677
H2XR46_CIOIN	LOC100183005	ENSCINP00000032130	ENSCINP00000015553	Uncharacterized protein.	Neuroglobin-like; Belongs to the globin family.	0.822
H2XR46_CIOIN	hb3	ENSCINP00000032130	ENSCINP00000013341	Uncharacterized protein.	GLOBIN domain-containing protein; Belongs to the globin family.	0.840
LOC100176359	ciad70l24	ENSCINP00000016603	ENSCINP00000015978	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	Cannabinoid receptor isoform X1; Belongs to the G-protein coupled receptor 1 family.	0.728
LOC100176359	hb3	ENSCINP00000016603	ENSCINP00000013341	Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily.	GLOBIN domain-containing protein; Belongs to the globin family.	0.720