F6Q0W6_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F6Q0W6_CIOIN

Uncharacterized protein; Belongs to the glycosyltransferase 47 family. (753 aa)

Predicted Functional Partners:

H2XW04_CIOIN

0.997

LOC100182244

0.649

F6WFB4_CIOIN

0.633

H2XWZ5_CIOIN

0.547

LOC100180531

0.544

H2XX04_CIOIN

0.535

H2XKX6_CIOIN

0.533

LOC100182982

0.531

F6V326_CIOIN

0.487

H2XKU8_CIOIN

0.481

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q0W6_CIOIN	F6V326_CIOIN	ENSCINP00000013346	ENSCINP00000024667	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	PXA domain-containing protein.	0.487
F6Q0W6_CIOIN	F6WFB4_CIOIN	ENSCINP00000013346	ENSCINP00000012314	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein.	0.633
F6Q0W6_CIOIN	H2XKU8_CIOIN	ENSCINP00000013346	ENSCINP00000030280	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Sulfotransferase; Belongs to the sulfotransferase 1 family.	0.481
F6Q0W6_CIOIN	H2XKX6_CIOIN	ENSCINP00000013346	ENSCINP00000030308	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.533
F6Q0W6_CIOIN	H2XW04_CIOIN	ENSCINP00000013346	ENSCINP00000033838	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.997
F6Q0W6_CIOIN	H2XWZ5_CIOIN	ENSCINP00000013346	ENSCINP00000034179	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein.	0.547
F6Q0W6_CIOIN	H2XX04_CIOIN	ENSCINP00000013346	ENSCINP00000034188	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein.	0.535
F6Q0W6_CIOIN	LOC100180531	ENSCINP00000013346	ENSCINP00000034005	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.544
F6Q0W6_CIOIN	LOC100182244	ENSCINP00000013346	ENSCINP00000027821	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.649
F6Q0W6_CIOIN	LOC100182982	ENSCINP00000013346	ENSCINP00000016267	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.531
F6V326_CIOIN	F6Q0W6_CIOIN	ENSCINP00000024667	ENSCINP00000013346	PXA domain-containing protein.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.487
F6WFB4_CIOIN	F6Q0W6_CIOIN	ENSCINP00000012314	ENSCINP00000013346	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.633
F6WFB4_CIOIN	H2XKX6_CIOIN	ENSCINP00000012314	ENSCINP00000030308	Uncharacterized protein.	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.704
F6WFB4_CIOIN	H2XW04_CIOIN	ENSCINP00000012314	ENSCINP00000033838	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.550
F6WFB4_CIOIN	H2XWZ5_CIOIN	ENSCINP00000012314	ENSCINP00000034179	Uncharacterized protein.	Uncharacterized protein.	0.574
F6WFB4_CIOIN	LOC100180531	ENSCINP00000012314	ENSCINP00000034005	Uncharacterized protein.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.644
F6WFB4_CIOIN	LOC100182244	ENSCINP00000012314	ENSCINP00000027821	Uncharacterized protein.	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.735
F6WFB4_CIOIN	LOC100182982	ENSCINP00000012314	ENSCINP00000016267	Uncharacterized protein.	Heparan-sulfate 6-O-sulfotransferase; 6-O-sulfation enzyme which catalyzes the transfer of sulfate from 3'-phosphoadenosine 5'-phosphosulfate (PAPS) to position 6 of the N-sulfoglucosamine residue (GlcNS) of heparan sulfate.	0.557
H2XKU8_CIOIN	F6Q0W6_CIOIN	ENSCINP00000030280	ENSCINP00000013346	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Uncharacterized protein; Belongs to the glycosyltransferase 47 family.	0.481
H2XKU8_CIOIN	H2XKX6_CIOIN	ENSCINP00000030280	ENSCINP00000030308	Sulfotransferase; Belongs to the sulfotransferase 1 family.	Uncharacterized protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.	0.529