LOC100180659 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC100180659

Probable thioredoxin-2. (175 aa)

Predicted Functional Partners:

Txnrd3

0.895

LOC100175802

0.837

F7AVB6_CIOIN

0.749

per-like

0.739

LOC100187432

0.739

F6QR00_CIOIN

0.715

ciic3

0.714

F6QQZ3_CIOIN

0.713

F6Z781_CIOIN

0.658

LOC100181030

0.609

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QQZ3_CIOIN	F7AVB6_CIOIN	ENSCINP00000013246	ENSCINP00000007825	Thioredoxin domain-containing protein.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.472
F6QQZ3_CIOIN	LOC100180659	ENSCINP00000013246	ENSCINP00000013356	Thioredoxin domain-containing protein.	Probable thioredoxin-2.	0.713
F6QQZ3_CIOIN	LOC100181030	ENSCINP00000013246	ENSCINP00000034464	Thioredoxin domain-containing protein.	Thioredoxin; Belongs to the thioredoxin family.	0.736
F6QQZ3_CIOIN	Txnrd3	ENSCINP00000013246	ENSCINP00000036039	Thioredoxin domain-containing protein.	Glutaredoxin domain-containing protein.	0.431
F6QQZ3_CIOIN	ciic3	ENSCINP00000013246	ENSCINP00000013583	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity).	0.831
F6QR00_CIOIN	LOC100180659	ENSCINP00000013245	ENSCINP00000013356	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Probable thioredoxin-2.	0.715
F6QR00_CIOIN	LOC100187432	ENSCINP00000013245	ENSCINP00000009079	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	39S ribosomal protein L11, mitochondrial-like; Belongs to the universal ribosomal protein uL11 family.	0.923
F6QR00_CIOIN	ciic3	ENSCINP00000013245	ENSCINP00000013583	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity).	0.532
F6Z781_CIOIN	LOC100180659	ENSCINP00000016510	ENSCINP00000013356	Calreticulin.	Probable thioredoxin-2.	0.658
F6Z781_CIOIN	LOC100181030	ENSCINP00000016510	ENSCINP00000034464	Calreticulin.	Thioredoxin; Belongs to the thioredoxin family.	0.564
F6Z781_CIOIN	ciic3	ENSCINP00000016510	ENSCINP00000013583	Calreticulin.	Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity).	0.605
F7AVB6_CIOIN	F6QQZ3_CIOIN	ENSCINP00000007825	ENSCINP00000013246	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Thioredoxin domain-containing protein.	0.472
F7AVB6_CIOIN	LOC100175802	ENSCINP00000007825	ENSCINP00000033175	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Peroxiredoxin-like.	0.472
F7AVB6_CIOIN	LOC100180659	ENSCINP00000007825	ENSCINP00000013356	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Probable thioredoxin-2.	0.749
F7AVB6_CIOIN	LOC100181030	ENSCINP00000007825	ENSCINP00000034464	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Thioredoxin; Belongs to the thioredoxin family.	0.655
F7AVB6_CIOIN	ciic3	ENSCINP00000007825	ENSCINP00000013583	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity).	0.777
F7AVB6_CIOIN	per-like	ENSCINP00000007825	ENSCINP00000006141	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	Peroxiredoxin-like.	0.472
LOC100175802	F7AVB6_CIOIN	ENSCINP00000033175	ENSCINP00000007825	Peroxiredoxin-like.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.472
LOC100175802	LOC100180659	ENSCINP00000033175	ENSCINP00000013356	Peroxiredoxin-like.	Probable thioredoxin-2.	0.837
LOC100175802	LOC100181030	ENSCINP00000033175	ENSCINP00000034464	Peroxiredoxin-like.	Thioredoxin; Belongs to the thioredoxin family.	0.746