STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6QVH1_CIOINUncharacterized protein. (545 aa)    
Predicted Functional Partners:
H2XJM4_CIOIN
G-patch domain-containing protein.
    
 0.998
F6W8G0_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 0.989
F6R2U8_CIOIN
MI domain-containing protein.
   
 0.982
F6VEU2_CIOIN
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 0.973
F6Y1N2_CIOIN
PSP domain-containing protein.
   
 0.971
F6SBF1_CIOIN
Uncharacterized protein.
   
 0.971
F6VHI4_CIOIN
PPIase cyclophilin-type domain-containing protein.
    
 0.970
F6UYA6_CIOIN
Uncharacterized protein.
   
  0.968
LOC494419
Zinc finger protein 183.
    
 0.959
LOC100178056
Splicing factor 3B subunit 3 isoform X1.
   
 0.950
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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