Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180875Solute carrier family 35 member E3. (309 aa)    
Predicted Functional Partners:
LOC100181275
TPT domain-containing protein.
      
 0.642
LOC100186387
GDP-fucose transporter 1.
      
 0.540
LOC100181332
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
 
    
 0.535
LOC100176985
UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter.
      
 0.504
Rap1b
Uncharacterized protein.
   
  
 0.439
LOC100177698
Adenosine 3'-phospho 5'-phosphosulfate transporter 1-like.
      
 0.422
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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