Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6U182_CIOINUncharacterized protein. (183 aa)    
Predicted Functional Partners:
H2Y0G9_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
 
 0.984
H2Y1Y4_CIOIN
CortBP2 domain-containing protein.
    
 
 0.977
F7A9M5_CIOIN
Uncharacterized protein.
    
 
 0.973
LOC100176205
Programmed cell death protein 10.
   
 
 0.965
F6XB46_CIOIN
Uncharacterized protein.
    
 
 0.957
F7AL82_CIOIN
Uncharacterized protein.
    
 
 0.931
LOC100186064
Serine/threonine-protein phosphatase.
   
 
 0.926
gsc
Transcription factor protein.
    
   0.919
H2XZZ6_CIOIN
Protein kinase domain-containing protein.
    
 
 0.908
H2XVY7_CIOIN
Uncharacterized protein.
    
 
 0.901
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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