STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6TE09_CIOINUncharacterized protein. (442 aa)    
Predicted Functional Partners:
H2XQB4_CIOIN
COesterase domain-containing protein.
      
 0.600
LOC100175065
Uncharacterized protein LOC100175065.
      
 0.563
F6PZD7_CIOIN
Hflx-type G domain-containing protein.
   
  
 0.551
F6YKG0_CIOIN
MIT domain-containing protein.
      
 0.544
H2XLA1_CIOIN
Uncharacterized protein.
      
 0.541
H2XPW5_CIOIN
Rab-GAP TBC domain-containing protein.
      
 0.536
F7BBF0_CIOIN
Uncharacterized protein.
      
 0.531
F6U095_CIOIN
Uncharacterized protein.
      
 0.482
LOC100177394
Gamma-taxilin.
      
 0.461
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.