STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6TE09_CIOINUncharacterized protein. (442 aa)    
Predicted Functional Partners:
LOC100175065
Uncharacterized protein LOC100175065.
      
 0.838
F6YKG0_CIOIN
MIT domain-containing protein.
      
 0.824
H2XPW5_CIOIN
Rab-GAP TBC domain-containing protein.
      
 0.814
F6Y9B7_CIOIN
Uncharacterized protein.
      
 0.812
H2XYD3_CIOIN
PID domain-containing protein.
    
   0.738
H2XLA1_CIOIN
Uncharacterized protein.
      
 0.729
F6PZD7_CIOIN
Hflx-type G domain-containing protein.
   
  
 0.670
F6U095_CIOIN
Uncharacterized protein.
      
 0.663
H2XZV1_CIOIN
Uncharacterized protein.
      
 0.658
LOC100180700
Thioredoxin domain-containing protein 9-like.
      
 0.646
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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