Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7ASC5_CIOINUncharacterized protein. (416 aa)    
Predicted Functional Partners:
H2XJT3_CIOIN
Uncharacterized protein.
  
 
 0.970
F6SP61_CIOIN
Ion_trans domain-containing protein.
  
 
 0.962
LOC100177142
Cation channel sperm-associated protein 2-like.
  
 
 0.935
H2Y085_CIOIN
Uncharacterized protein.
    
 0.915
F6SKF5_CIOIN
Uncharacterized protein.
    
 0.742
H2Y0F0_CIOIN
Ion_trans domain-containing protein.
    
 0.742
H2Y2W9_CIOIN
Uncharacterized protein.
    
 0.742
F6QXN6_CIOIN
RRM domain-containing protein.
      
 0.694
LOC100182231
Phosphoglycerate kinase.
   
  
 0.664
F6XUX1_CIOIN
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
      
 0.640
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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