STRINGSTRING
pk1 protein (Ciona intestinalis) - STRING interaction network
"pk1" - Prickle 1 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pk1Prickle 1 (1060 aa)    
Predicted Functional Partners:
dsh
Dishevelled homolog (685 aa)
       
  0.927
ENSCING00000003625
Uncharacterized protein (507 aa)
       
 
  0.867
rhoa
RhoA protein (193 aa)
       
  0.723
Rac1
Uncharacterized protein (194 aa)
       
  0.684
celsr2
Uncharacterized protein (2554 aa)
     
   
  0.683
p47phox
Neutrophil cytosolic factor 1 (461 aa)
       
 
  0.663
ENSCING00000012164
Uncharacterized protein (415 aa)
       
 
  0.663
ENSCING00000008035
Zinc finger protein Ci-ZF(ZZ/RING)-1 (778 aa)
       
  0.655
zf(zz)-7
Uncharacterized protein; Zinc finger protein (619 aa)
       
  0.655
ENSCING00000023687
Uncharacterized protein (820 aa)
       
  0.652
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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