LOC100186199 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100186199

N-alpha-acetyltransferase 10. (219 aa)

Predicted Functional Partners:

F7B5P4_CIOIN

0.998

H2XJN3_CIOIN

0.998

LOC104265533

0.987

F7AER5_CIOIN

0.857

LOC100179536

0.856

H2XYK8_CIOIN

0.856

LOC100179473

0.826

LOC100184253

0.825

H2XQX5_CIOIN

0.810

LOC100179502

0.780

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F7AER5_CIOIN	F7B5P4_CIOIN	ENSCINP00000002417	ENSCINP00000010968	Uncharacterized protein.	Uncharacterized protein.	0.870
F7AER5_CIOIN	H2XJN3_CIOIN	ENSCINP00000002417	ENSCINP00000029865	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.763
F7AER5_CIOIN	LOC100179502	ENSCINP00000002417	ENSCINP00000021531	Uncharacterized protein.	N-alpha-acetyltransferase 20-like.	0.823
F7AER5_CIOIN	LOC100184253	ENSCINP00000002417	ENSCINP00000010530	Uncharacterized protein.	N-alpha-acetyltransferase 30.	0.999
F7AER5_CIOIN	LOC100186199	ENSCINP00000002417	ENSCINP00000013819	Uncharacterized protein.	N-alpha-acetyltransferase 10.	0.857
F7AER5_CIOIN	LOC104265533	ENSCINP00000002417	ENSCINP00000036050	Uncharacterized protein.	Uncharacterized protein.	0.426
F7B5P4_CIOIN	F7AER5_CIOIN	ENSCINP00000010968	ENSCINP00000002417	Uncharacterized protein.	Uncharacterized protein.	0.870
F7B5P4_CIOIN	H2XJN3_CIOIN	ENSCINP00000010968	ENSCINP00000029865	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.997
F7B5P4_CIOIN	H2XYK8_CIOIN	ENSCINP00000010968	ENSCINP00000034742	Uncharacterized protein.	N-acetyltransferase domain-containing protein.	0.775
F7B5P4_CIOIN	LOC100179473	ENSCINP00000010968	ENSCINP00000008324	Uncharacterized protein.	Guanine nucleotide-binding protein subunit beta-2-like 1.	0.891
F7B5P4_CIOIN	LOC100179502	ENSCINP00000010968	ENSCINP00000021531	Uncharacterized protein.	N-alpha-acetyltransferase 20-like.	0.877
F7B5P4_CIOIN	LOC100179536	ENSCINP00000010968	ENSCINP00000016656	Uncharacterized protein.	60S ribosomal protein L35.	0.705
F7B5P4_CIOIN	LOC100184253	ENSCINP00000010968	ENSCINP00000010530	Uncharacterized protein.	N-alpha-acetyltransferase 30.	0.841
F7B5P4_CIOIN	LOC100186199	ENSCINP00000010968	ENSCINP00000013819	Uncharacterized protein.	N-alpha-acetyltransferase 10.	0.998
F7B5P4_CIOIN	LOC104265533	ENSCINP00000010968	ENSCINP00000036050	Uncharacterized protein.	Uncharacterized protein.	0.971
H2XJN3_CIOIN	F7AER5_CIOIN	ENSCINP00000029865	ENSCINP00000002417	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.763
H2XJN3_CIOIN	F7B5P4_CIOIN	ENSCINP00000029865	ENSCINP00000010968	N-acetyltransferase domain-containing protein.	Uncharacterized protein.	0.997
H2XJN3_CIOIN	H2XYK8_CIOIN	ENSCINP00000029865	ENSCINP00000034742	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.735
H2XJN3_CIOIN	LOC100179502	ENSCINP00000029865	ENSCINP00000021531	N-acetyltransferase domain-containing protein.	N-alpha-acetyltransferase 20-like.	0.923
H2XJN3_CIOIN	LOC100179536	ENSCINP00000029865	ENSCINP00000016656	N-acetyltransferase domain-containing protein.	60S ribosomal protein L35.	0.601