Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Y050_CIOINBTB domain-containing protein. (602 aa)    
Predicted Functional Partners:
F6R472_CIOIN
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.637
F6Z1B1_CIOIN
Uncharacterized protein.
  
 
  0.553
H2XVI1_CIOIN
Uncharacterized protein.
  
 
  0.542
F7BAZ1_CIOIN
Uncharacterized protein.
  
     0.527
F7BC57_CIOIN
BTB domain-containing protein.
  
 
0.521
H2XUY6_CIOIN
Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.
    
 0.448
LOC100183592
COP9 signalosome complex subunit 4.
    
 0.426
F6U7S8_CIOIN
BTB domain-containing protein.
    
 0.423
LOC100175568
BTB domain-containing protein.
  
0.404
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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