STRINGSTRING
hh1 protein (Ciona intestinalis) - STRING interaction network
"hh1" - Hedgehog homolog 1 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hh1Hedgehog homolog 1 ; Intercellular signal essential for a variety of patterning events during development (557 aa)    
Predicted Functional Partners:
ENSCING00000011698
Uncharacterized protein (404 aa)
     
  0.966
ENSCING00000018399
Uncharacterized protein (1179 aa)
     
  0.898
smoothened
Smoothened protein (441 aa)
     
 
  0.850
gli
Transcription factor protein (1098 aa)
     
  0.847
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
       
  0.819
ENSCING00000001850
Uncharacterized protein ; Cell surface proteoglycan that bears heparan sulfate (521 aa)
     
  0.804
ENSCING00000019702
Uncharacterized protein (997 aa)
     
 
  0.771
ENSCING00000002640
Uncharacterized protein ; Cell surface proteoglycan that bears heparan sulfate (438 aa)
     
  0.715
ENSCING00000006822
Protein Wnt ; Ligand for members of the frizzled family of seven transmembrane receptors (175 aa)
     
 
  0.715
n
Notch precursor (2549 aa)
     
 
  0.676
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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