STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6XBC5_CIOINProtein kinase domain-containing protein. (656 aa)    
Predicted Functional Partners:
LOC100175452
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.886
F6W453_CIOIN
Uncharacterized protein.
    
   0.870
LOC100187414
RNA-binding protein 39-like.
    
 
 0.716
LOC100178141
U1 small nuclear ribonucleoprotein 70 kDa-like.
    
 
 0.692
F6ZR14_CIOIN
Uncharacterized protein.
    
 
 0.692
LOC100185978
Serine/arginine-rich splicing factor 5 isoform X1.
    
 
 0.629
F6Y7T8_CIOIN
Uncharacterized protein.
    
 
 0.629
H2XPK9_CIOIN
Uncharacterized protein.
    
 
 0.629
H2XY34_CIOIN
Uncharacterized protein.
    
 
 0.629
F6SGH3_CIOIN
RRM domain-containing protein.
    
 
 0.613
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (16%) [HD]