STRINGSTRING
LOC778994 protein (Ciona intestinalis) - STRING interaction network
"LOC778994" - EFHC1 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC778994EFHC1 (497 aa)    
Predicted Functional Partners:
ENSCING00000002772
Uncharacterized protein (402 aa)
     
   
  0.509
tekt3
Uncharacterized protein (494 aa)
     
   
  0.507
tektinB1
Tektin B1 (435 aa)
     
   
  0.507
tektinA1
Tektin A1 (447 aa)
     
   
  0.507
ENSCING00000024747
Uncharacterized protein (146 aa)
     
   
  0.503
pf16
Pf16 protein (425 aa)
     
   
  0.500
ENSCING00000023881
Uncharacterized protein (171 aa)
     
   
  0.491
ci-rsp9
Uncharacterized protein LOC100179789 (276 aa)
     
   
  0.491
wdr78
Uncharacterized protein (778 aa)
     
   
  0.410
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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