STRINGSTRING
tram1/2 protein (Ciona intestinalis) - STRING interaction network
"tram1/2" - Translocating chain-associating membrane protein 1/2 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tram1/2Translocating chain-associating membrane protein 1/2 (375 aa)    
Predicted Functional Partners:
ENSCING00000017966
Uncharacterized protein (187 aa)
     
 
  0.756
pfkm
6-phosphofructokinase ; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (758 aa)
 
            0.604
ENSCING00000003014
Uncharacterized protein (185 aa)
     
 
  0.557
ENSCING00000024472
Uncharacterized protein (97 aa)
     
    0.495
psl3
Presenilin-like protein 3 (372 aa)
     
      0.473
ENSCING00000016350
Uncharacterized protein (172 aa)
     
 
    0.454
ENSCING00000009122
Uncharacterized protein (630 aa)
     
 
    0.453
ENSCING00000009327
Uncharacterized protein (454 aa)
     
 
    0.423
ENSCING00000005044
Uncharacterized protein ; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (438 aa)
     
 
    0.413
ENSCING00000003556
Uncharacterized protein (800 aa)
           
  0.410
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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