STRINGSTRING
syt1 protein (Ciona intestinalis) - STRING interaction network
"syt1" - Synaptotagmin in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt1Synaptotagmin (328 aa)    
Predicted Functional Partners:
ENSCING00000015685
Synaptosomal-associated protein (160 aa)
     
  0.994
ENSCING00000021774
Uncharacterized protein (76 aa)
     
  0.986
ENSCING00000005538
Uncharacterized protein (236 aa)
     
  0.986
ENSCING00000004884
Uncharacterized protein (252 aa)
     
  0.978
ENSCING00000006714
Uncharacterized protein (118 aa)
     
  0.944
ENSCING00000022491
Uncharacterized protein (126 aa)
     
  0.925
ENSCING00000023844
Uncharacterized protein (84 aa)
     
  0.910
ENSCING00000009005
Uncharacterized protein (564 aa)
     
  0.909
ENSCING00000023408
Uncharacterized protein (154 aa)
     
  0.820
ENSCING00000012954
Uncharacterized protein (182 aa)
     
  0.820
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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