F7B006_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F7B006_CIOIN

Uncharacterized protein. (571 aa)

Predicted Functional Partners:

LOC100186402

0.582

F7A2F3_CIOIN

0.580

F6SIS7_CIOIN

0.577

LOC100177342

0.558

ci-ak58

0.552

H2XQ36_CIOIN

0.522

LOC100178002

0.503

H2Y0B8_CIOIN

0.499

LOC100181032

0.437

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SIS7_CIOIN	F7A2F3_CIOIN	ENSCINP00000027746	ENSCINP00000015826	Uncharacterized protein.	Uncharacterized protein.	0.919
F6SIS7_CIOIN	F7B006_CIOIN	ENSCINP00000027746	ENSCINP00000014012	Uncharacterized protein.	Uncharacterized protein.	0.577
F6SIS7_CIOIN	LOC100177342	ENSCINP00000027746	ENSCINP00000014776	Uncharacterized protein.	Uncharacterized protein.	0.599
F6SIS7_CIOIN	ci-ak58	ENSCINP00000027746	ENSCINP00000008856	Uncharacterized protein.	Radial spoke protein AK58; Belongs to the adenylate kinase family.	0.519
F7A2F3_CIOIN	F6SIS7_CIOIN	ENSCINP00000015826	ENSCINP00000027746	Uncharacterized protein.	Uncharacterized protein.	0.919
F7A2F3_CIOIN	F7B006_CIOIN	ENSCINP00000015826	ENSCINP00000014012	Uncharacterized protein.	Uncharacterized protein.	0.580
F7A2F3_CIOIN	LOC100177342	ENSCINP00000015826	ENSCINP00000014776	Uncharacterized protein.	Uncharacterized protein.	0.473
F7A2F3_CIOIN	ci-ak58	ENSCINP00000015826	ENSCINP00000008856	Uncharacterized protein.	Radial spoke protein AK58; Belongs to the adenylate kinase family.	0.519
F7B006_CIOIN	F6SIS7_CIOIN	ENSCINP00000014012	ENSCINP00000027746	Uncharacterized protein.	Uncharacterized protein.	0.577
F7B006_CIOIN	F7A2F3_CIOIN	ENSCINP00000014012	ENSCINP00000015826	Uncharacterized protein.	Uncharacterized protein.	0.580
F7B006_CIOIN	H2XQ36_CIOIN	ENSCINP00000014012	ENSCINP00000031770	Uncharacterized protein.	Uncharacterized protein.	0.522
F7B006_CIOIN	H2Y0B8_CIOIN	ENSCINP00000014012	ENSCINP00000035352	Uncharacterized protein.	Uncharacterized protein.	0.499
F7B006_CIOIN	LOC100177342	ENSCINP00000014012	ENSCINP00000014776	Uncharacterized protein.	Uncharacterized protein.	0.558
F7B006_CIOIN	LOC100178002	ENSCINP00000014012	ENSCINP00000035730	Uncharacterized protein.	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.	0.503
F7B006_CIOIN	LOC100181032	ENSCINP00000014012	ENSCINP00000004526	Uncharacterized protein.	SCP2 domain-containing protein.	0.437
F7B006_CIOIN	LOC100186402	ENSCINP00000014012	ENSCINP00000036163	Uncharacterized protein.	Uncharacterized protein LOC100186402.	0.582
F7B006_CIOIN	ci-ak58	ENSCINP00000014012	ENSCINP00000008856	Uncharacterized protein.	Radial spoke protein AK58; Belongs to the adenylate kinase family.	0.552
H2XQ36_CIOIN	F7B006_CIOIN	ENSCINP00000031770	ENSCINP00000014012	Uncharacterized protein.	Uncharacterized protein.	0.522
H2Y0B8_CIOIN	F7B006_CIOIN	ENSCINP00000035352	ENSCINP00000014012	Uncharacterized protein.	Uncharacterized protein.	0.499
LOC100177342	F6SIS7_CIOIN	ENSCINP00000014776	ENSCINP00000027746	Uncharacterized protein.	Uncharacterized protein.	0.599