STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181773Uncharacterized protein. (115 aa)    
Predicted Functional Partners:
H2XVQ2_CIOIN
Uncharacterized protein.
    
 0.853
H2XNI5_CIOIN
Ig-like domain-containing protein.
   
 0.739
F6UJ17_CIOIN
Uncharacterized protein.
    
 0.684
H2XJS9_CIOIN
Protein kinase domain-containing protein.
    
 0.684
H2Y2H0_CIOIN
Protein kinase domain-containing protein.
    
 0.684
LOC100176522
AP-1 complex subunit gamma.
    
 0.630
LOC100175404
Adaptin_N domain-containing protein.
    
 0.629
LOC100175300
AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
    
 0.606
LOC100175227
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.574
F7BIS1_CIOIN
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.562
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.