Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC100184214F-box/SPRY domain-containing protein 1. (262 aa)    
Predicted Functional Partners:
LOC100181511
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.974
F6PW28_CIOIN
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.971
F7BIJ9_CIOIN
Uncharacterized protein.
    
 
 0.922
F6XS68_CIOIN
Uncharacterized protein.
     
 0.853
F6TT30_CIOIN
CTP_transf_like domain-containing protein.
    
 
 0.853
F6U9S1_CIOIN
RING-type domain-containing protein.
    
 
 0.831
H2XL89_CIOIN
PHR domain-containing protein.
    
 
 0.831
H2XY58_CIOIN
PHR domain-containing protein.
    
 
 0.831
LOC100180100
Uncharacterized protein.
    
 
 0.831
H2Y233_CIOIN
Nuclear cap-binding protein subunit 2.
      
 0.814
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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