Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180854PHB domain-containing protein. (287 aa)    
Predicted Functional Partners:
F6SR69_CIOIN
Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
    
 0.497
F6TDC8_CIOIN
Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
    
 0.497
F6ULW5_CIOIN
Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
    
 0.497
F6VJJ2_CIOIN
Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
    
 0.497
Kcnq4/5
Uncharacterized protein.
      
 0.492
F7AIB9_CIOIN
Uncharacterized protein.
   
  0.492
F6YHB0_CIOIN
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.461
LOC100184096
Anillin-like isoform X1.
    
 0.450
F6X056_CIOIN
Uncharacterized protein.
    
 0.446
F7AHK4_CIOIN
AAA domain-containing protein.
   
 0.445
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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