STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6YUQ8_CIOINMPN domain-containing protein. (457 aa)    
Predicted Functional Partners:
LOC100184510
PCI domain-containing protein.
   
 0.961
F6XKP0_CIOIN
AAA domain-containing protein; Belongs to the AAA ATPase family.
  
 0.945
LOC100182082
AAA domain-containing protein; Belongs to the AAA ATPase family.
   
 0.945
F6QS20_CIOIN
VWFA domain-containing protein.
   
 0.944
LOC100184104
PCI domain-containing protein.
   
 0.941
LOC100185096
26S proteasome regulatory subunit 7; Belongs to the AAA ATPase family.
   
 0.940
H2XYW0_CIOIN
MPN domain-containing protein.
   
 0.939
F6YHS8_CIOIN
PCI domain-containing protein.
   
 0.938
LOC100177476
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
 0.937
F6Z491_CIOIN
Proteasome subunit alpha type.
   
 0.937
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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