STRINGSTRING
if-f protein (Ciona intestinalis) - STRING interaction network
"if-f" - Intermediate filament IF-Fb in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
if-fIntermediate filament IF-Fb (501 aa)    
Predicted Functional Partners:
ENSCING00000024475
Uncharacterized protein (356 aa)
       
  0.411
ENSCING00000002180
Uncharacterized protein (575 aa)
       
  0.411
ENSCING00000022737
Uncharacterized protein (526 aa)
       
  0.407
ENSCING00000009506
Uncharacterized protein (216 aa)
       
  0.407
ENSCING00000022039
Uncharacterized protein (518 aa)
       
  0.407
ENSCING00000015330
Uncharacterized protein (290 aa)
       
  0.407
ENSCING00000006484
Uncharacterized protein (401 aa)
       
  0.407
cam-k
Calmodulin-dependent protein kinase homologue (324 aa)
       
  0.407
ENSCING00000010086
Uncharacterized protein (363 aa)
       
  0.407
ENSCING00000012471
Uncharacterized protein (316 aa)
       
  0.407
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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