F6W8M0_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6W8M0_CIOIN

Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (565 aa)

Predicted Functional Partners:

LOC100178975

0.943

LOC100176174

0.930

LOC100180662

0.928

LOC100176704

0.926

F6SCE7_CIOIN

0.917

LOC100182764

0.907

LOC100177673

0.903

LOC104266244

0.876

F6XUK1_CIOIN

0.859

H2XPM9_CIOIN

0.854

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SCE7_CIOIN	F6W8M0_CIOIN	ENSCINP00000005933	ENSCINP00000014563	Uncharacterized protein.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.917
F6SCE7_CIOIN	F6XUK1_CIOIN	ENSCINP00000005933	ENSCINP00000022775	Uncharacterized protein.	Uncharacterized protein.	0.987
F6SCE7_CIOIN	H2XPM9_CIOIN	ENSCINP00000005933	ENSCINP00000031613	Uncharacterized protein.	Uncharacterized protein.	0.979
F6SCE7_CIOIN	LOC100176174	ENSCINP00000005933	ENSCINP00000009335	Uncharacterized protein.	Uncharacterized protein.	0.987
F6SCE7_CIOIN	LOC100177673	ENSCINP00000005933	ENSCINP00000031552	Uncharacterized protein.	Vacuolar protein-sorting-associated protein 25.	0.620
F6SCE7_CIOIN	LOC100178975	ENSCINP00000005933	ENSCINP00000021747	Uncharacterized protein.	Charged multivesicular body protein 2a-like.	0.989
F6SCE7_CIOIN	LOC100180662	ENSCINP00000005933	ENSCINP00000026802	Uncharacterized protein.	Charged multivesicular body protein 6-B-like.	0.942
F6SCE7_CIOIN	LOC100182764	ENSCINP00000005933	ENSCINP00000009854	Uncharacterized protein.	Charged multivesicular body protein 5.	0.983
F6SCE7_CIOIN	LOC104266244	ENSCINP00000005933	ENSCINP00000031885	Uncharacterized protein.	Vacuolar protein sorting-associated protein VTA1 homolog.	0.977
F6W8M0_CIOIN	F6SCE7_CIOIN	ENSCINP00000014563	ENSCINP00000005933	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Uncharacterized protein.	0.917
F6W8M0_CIOIN	F6XUK1_CIOIN	ENSCINP00000014563	ENSCINP00000022775	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Uncharacterized protein.	0.859
F6W8M0_CIOIN	H2XPM9_CIOIN	ENSCINP00000014563	ENSCINP00000031613	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Uncharacterized protein.	0.854
F6W8M0_CIOIN	LOC100176174	ENSCINP00000014563	ENSCINP00000009335	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Uncharacterized protein.	0.930
F6W8M0_CIOIN	LOC100176704	ENSCINP00000014563	ENSCINP00000012524	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.926
F6W8M0_CIOIN	LOC100177673	ENSCINP00000014563	ENSCINP00000031552	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Vacuolar protein-sorting-associated protein 25.	0.903
F6W8M0_CIOIN	LOC100178975	ENSCINP00000014563	ENSCINP00000021747	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Charged multivesicular body protein 2a-like.	0.943
F6W8M0_CIOIN	LOC100180662	ENSCINP00000014563	ENSCINP00000026802	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Charged multivesicular body protein 6-B-like.	0.928
F6W8M0_CIOIN	LOC100182764	ENSCINP00000014563	ENSCINP00000009854	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Charged multivesicular body protein 5.	0.907
F6W8M0_CIOIN	LOC104266244	ENSCINP00000014563	ENSCINP00000031885	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	Vacuolar protein sorting-associated protein VTA1 homolog.	0.876
F6XUK1_CIOIN	F6SCE7_CIOIN	ENSCINP00000022775	ENSCINP00000005933	Uncharacterized protein.	Uncharacterized protein.	0.987