Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182783Coiled-coil domain-containing protein 13-like isoform X1. (608 aa)    
Predicted Functional Partners:
F6YHN3_CIOIN
Uncharacterized protein.
      
 0.838
LOC100180426
Ion_trans domain-containing protein.
      
 0.743
LOC100177482
Uncharacterized protein.
    
 
 0.649
Hh1
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
   
 0.647
Hh2
Uncharacterized protein.
   
 0.647
F6ZCC7_CIOIN
Uncharacterized protein.
    
 
 0.640
F6UGD7_CIOIN
Uncharacterized protein.
      
 0.603
F6V9P3_CIOIN
Uncharacterized protein.
      
 0.583
F6S2A1_CIOIN
Uncharacterized protein.
  
  
 0.582
LOC100181042
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.577
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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