Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F6SWB6_CIOINANK_REP_REGION domain-containing protein. (457 aa)    
Predicted Functional Partners:
LOC100177711
DDHD domain-containing protein.
   
  
 0.559
F6WV94_CIOIN
zf-3CxxC domain-containing protein.
      
 0.517
LOC100175738
Uncharacterized protein.
      
 0.508
H2XKP6_CIOIN
Ribosomal_L14e domain-containing protein.
      
 0.506
LOC101242487
Small integral membrane protein 7-like.
      
 0.494
LOC100175959
60S acidic ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.
      
 0.489
LOC100177507
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
      
 0.473
H2XXH2_CIOIN
Uncharacterized protein.
      
 0.443
LOC100177458
60S ribosomal protein L37a.
      
 0.428
F7AP11_CIOIN
Uncharacterized protein.
      
 0.427
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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