Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC100185622Programmed cell death protein 6-like. (208 aa)    
Predicted Functional Partners:
F7BDH1_CIOIN
BRO1 domain-containing protein.
    
 
 0.726
F6YIU2_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
 
 0.674
LOC104265386
Uncharacterized protein.
   
 
 0.568
LOC100187361
Heme-binding protein 2-like isoform X1.
    
   0.562
rngi
Caprin-1_dimer domain-containing protein.
      
 0.518
LOC100187163
Ankyrin repeat domain-containing protein 40-like.
    
 
 0.489
LOC100177711
DDHD domain-containing protein.
    
 
 0.476
LOC100182407
Protein SEC13 homolog; Belongs to the WD repeat SEC13 family.
    
 
 0.406
F6R6Z5_CIOIN
BTB domain-containing protein.
    
 
 0.404
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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