STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100184004Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1. (225 aa)    
Predicted Functional Partners:
H2XQZ1_CIOIN
Uncharacterized protein.
   
 0.989
LOC100176507
Synaptobrevin homolog YKT6-like isoform X2; Belongs to the synaptobrevin family.
    
 0.988
H2XNY0_CIOIN
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
   
 0.985
LOC100177611
Vesicle-associated membrane protein 4-like.
   
 0.980
H2Y0C8_CIOIN
Syntaxin-6_N domain-containing protein.
   
 0.976
H2XQ34_CIOIN
Uncharacterized protein.
    
 0.970
H2XUP2_CIOIN
V-SNARE coiled-coil homology domain-containing protein.
   
 0.966
F6Z6E4_CIOIN
V-SNARE domain-containing protein.
    
 0.952
LOC100181871
t-SNARE coiled-coil homology domain-containing protein.
    
 0.949
H2XU17_CIOIN
Longin domain-containing protein.
    
 0.936
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.