STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177772C-type lectin mannose-binding isoform-like. (237 aa)    
Predicted Functional Partners:
bf-3
Uncharacterized protein; Belongs to the peptidase S1 family.
    
 0.562
H2XZP0_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
 0.486
H2Y0T8_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
 0.486
meta2
Uncharacterized protein.
     
 0.478
LOC100179852
Microfibril-associated glycoprotein 4-like.
    
 0.429
H2XJM3_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
 0.429
H2XK46_CIOIN
Fibrinogen C-terminal domain-containing protein.
    
 0.429
LOC100182094
Fibrinogen C-terminal domain-containing protein.
    
 0.429
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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