F6ZAN3_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6ZAN3_CIOIN

Uncharacterized protein. (401 aa)

Predicted Functional Partners:

F7B314_CIOIN

0.956

LOC100181294

0.953

LOC100182630

0.946

H2XW62_CIOIN

0.945

F6ZAP9_CIOIN

0.942

LOC100179082

0.932

F7ANB6_CIOIN

0.920

F6X0V6_CIOIN

0.904

LOC100184954

0.902

LOC100184905

0.897

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6X0V6_CIOIN	F6ZAN3_CIOIN	ENSCINP00000017470	ENSCINP00000014727	Uncharacterized protein.	Uncharacterized protein.	0.904
F6X0V6_CIOIN	F6ZAP9_CIOIN	ENSCINP00000017470	ENSCINP00000014723	Uncharacterized protein.	Uncharacterized protein.	0.904
F6X0V6_CIOIN	F7ANB6_CIOIN	ENSCINP00000017470	ENSCINP00000008390	Uncharacterized protein.	Uncharacterized protein.	0.999
F6X0V6_CIOIN	F7B314_CIOIN	ENSCINP00000017470	ENSCINP00000005320	Uncharacterized protein.	Uncharacterized protein.	0.999
F6X0V6_CIOIN	H2XW62_CIOIN	ENSCINP00000017470	ENSCINP00000033896	Uncharacterized protein.	Uncharacterized protein.	0.999
F6X0V6_CIOIN	LOC100179082	ENSCINP00000017470	ENSCINP00000032241	Uncharacterized protein.	Intraflagellar transport protein 22 homolog isoform X1.	0.992
F6X0V6_CIOIN	LOC100181294	ENSCINP00000017470	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.989
F6X0V6_CIOIN	LOC100182630	ENSCINP00000017470	ENSCINP00000008817	Uncharacterized protein.	Intraflagellar transport protein 81 homolog.	0.998
F6X0V6_CIOIN	LOC100184905	ENSCINP00000017470	ENSCINP00000008934	Uncharacterized protein.	TRAF3-interacting protein 1.	0.997
F6X0V6_CIOIN	LOC100184954	ENSCINP00000017470	ENSCINP00000018073	Uncharacterized protein.	Uncharacterized protein.	0.998
F6ZAN3_CIOIN	F6X0V6_CIOIN	ENSCINP00000014727	ENSCINP00000017470	Uncharacterized protein.	Uncharacterized protein.	0.904
F6ZAN3_CIOIN	F6ZAP9_CIOIN	ENSCINP00000014727	ENSCINP00000014723	Uncharacterized protein.	Uncharacterized protein.	0.942
F6ZAN3_CIOIN	F7ANB6_CIOIN	ENSCINP00000014727	ENSCINP00000008390	Uncharacterized protein.	Uncharacterized protein.	0.920
F6ZAN3_CIOIN	F7B314_CIOIN	ENSCINP00000014727	ENSCINP00000005320	Uncharacterized protein.	Uncharacterized protein.	0.956
F6ZAN3_CIOIN	H2XW62_CIOIN	ENSCINP00000014727	ENSCINP00000033896	Uncharacterized protein.	Uncharacterized protein.	0.945
F6ZAN3_CIOIN	LOC100179082	ENSCINP00000014727	ENSCINP00000032241	Uncharacterized protein.	Intraflagellar transport protein 22 homolog isoform X1.	0.932
F6ZAN3_CIOIN	LOC100181294	ENSCINP00000014727	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.953
F6ZAN3_CIOIN	LOC100182630	ENSCINP00000014727	ENSCINP00000008817	Uncharacterized protein.	Intraflagellar transport protein 81 homolog.	0.946
F6ZAN3_CIOIN	LOC100184905	ENSCINP00000014727	ENSCINP00000008934	Uncharacterized protein.	TRAF3-interacting protein 1.	0.897
F6ZAN3_CIOIN	LOC100184954	ENSCINP00000014727	ENSCINP00000018073	Uncharacterized protein.	Uncharacterized protein.	0.902