Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6W790_CIOINC2 domain-containing protein. (995 aa)    
Predicted Functional Partners:
LOC100181289
Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.
    
   0.953
H2XXV1_CIOIN
Uncharacterized protein.
  
 
 
 0.944
LOC100177564
Uncharacterized protein.
      
 0.662
H2XX78_CIOIN
Uncharacterized protein.
      
 0.651
F7AFQ9_CIOIN
Uncharacterized protein.
      
 0.555
H2Y0B1_CIOIN
HIT-type domain-containing protein.
      
 0.540
F6XJG1_CIOIN
Uncharacterized protein.
   
  
 0.510
F6YVJ9_CIOIN
VIR_N domain-containing protein.
   
  
 0.510
F6U8P2_CIOIN
Rab-GAP TBC domain-containing protein.
      
 0.499
H2XRS4_CIOIN
Uncharacterized protein.
      
 0.499
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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