Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100177714Myosin regulatory light chain, smooth muscle isoform X3. (171 aa)    
Predicted Functional Partners:
LOC100187178
Myosin regulatory light chain 12A.
  
 
 
0.924
LOC100180062
Myosin regulatory light chain, smooth muscle-like.
  
  
 
0.902
F6R955_CIOIN
Uncharacterized protein.
   
 0.675
LOC100179388
Uncharacterized protein.
   
 0.644
F6R9V2_CIOIN
EF-hand domain-containing protein.
   
 0.626
F6R9M9_CIOIN
EF-hand domain-containing protein.
   
 0.626
F6R9G4_CIOIN
EF-hand domain-containing protein.
   
 0.626
F6VRV5_CIOIN
Uncharacterized protein.
   
 0.615
F6YSA0_CIOIN
Uncharacterized protein.
   
 0.550
F6XZ04_CIOIN
Uncharacterized protein.
   
 0.550
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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