Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
LOC100185185Asparagine synthetase [glutamine-hydrolyzing]. (564 aa)    
Predicted Functional Partners:
LOC100179315
Aspartate aminotransferase.
   
 0.954
LOC100184965
Aspartate aminotransferase.
   
 0.952
F6PG92_CIOIN
Uncharacterized protein.
   
 
 0.935
LOC100182906
Uncharacterized protein.
     
 0.933
F6QF37_CIOIN
Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
  
 
 0.924
F6PHH7_CIOIN
ATP-grasp domain-containing protein.
    
 0.919
H2XMB6_CIOIN
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
 
    
 0.913
LOC100180021
Glutamine amidotransferase type-2 domain-containing protein.
  
 
 
0.903
LOC100182260
Aspartoacylase-like.
     
 0.902
gad
Uncharacterized protein.
   
 
 0.857
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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