STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6VKF0_CIOINDAO domain-containing protein. (451 aa)    
Predicted Functional Partners:
LOC100185279
Tyrosine--tRNA ligase.
   
  
 0.850
F6RQ34_CIOIN
Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration.
   
  
 0.842
Ci-ZF(C2HC)-1
Zinc finger protein.
      
 0.838
LOC101242316
3-ketoacyl-CoA thiolase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.
      
 0.825
F6WKB8_CIOIN
CIA30 domain-containing protein.
   
 
 0.776
F6TCH6_CIOIN
GatB_N domain-containing protein.
   
  
 0.744
LOC100179784
Uncharacterized protein LOC100179784.
   
 
 0.717
F7B499_CIOIN
Methyltransf_11 domain-containing protein.
      
 0.698
H2XN70_CIOIN
Uncharacterized protein.
      
 0.693
LOC100181220
Iron-sulfur protein NUBPL isoform X2.
   
  
 0.687
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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