Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F6UWQ4_CIOINFibrinogen C-terminal domain-containing protein. (255 aa)    
Predicted Functional Partners:
LOC100182351
Plasminogen-like; Belongs to the peptidase S1 family.
   
 0.811
F6TCY4_CIOIN
Kringle domain-containing protein.
   
 0.811
F6PIT9_CIOIN
Uncharacterized protein.
   
 0.784
F6U7R9_CIOIN
Uncharacterized protein.
   
  
 0.641
F6TTH0_CIOIN
Uncharacterized protein.
   
 0.584
H2Y1D3_CIOIN
Uncharacterized protein.
   
 0.584
F6QQU5_CIOIN
Fibrinogen C-terminal domain-containing protein.
  
  
  0.533
SoxB1
HMG box domain-containing protein.
    
 
 0.529
F6YF25_CIOIN
VWFA domain-containing protein.
   
  
 0.527
LOC100183372
Fatty acid binding protein 1-A, liver-like.
   
  
 0.525
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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