STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6S7X2_CIOINEndoglucanase. (468 aa)    
Predicted Functional Partners:
LOC100182860
Uncharacterized protein LOC100182860 isoform X3.
    
  0.906
F6ZAK6_CIOIN
Uncharacterized protein.
    
 0.571
H2XKY9_CIOIN
Uncharacterized protein.
    
 0.571
H2XMW4_CIOIN
Uncharacterized protein.
    
 0.571
H2XR09_CIOIN
Uncharacterized protein.
    
 0.571
H2XXV0_CIOIN
Uncharacterized protein.
    
 0.571
H2XY46_CIOIN
Uncharacterized protein.
    
 0.571
L7N0T0_CIOIN
RanBD1 domain-containing protein.
    
 0.532
F6TF50_CIOIN
Uncharacterized protein.
    
 0.509
Ash2-like
B30.2/SPRY domain-containing protein.
    
 0.476
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.