Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F6UKV2_CIOINUncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (771 aa)    
Predicted Functional Partners:
H2XWE4_CIOIN
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 0.811
F6Y1N2_CIOIN
PSP domain-containing protein.
    
 
 0.747
LOC100186181
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.723
LOC100176570
Transmembrane protein 184C-like.
      
 0.674
LOC100177970
Splicing factor 3B subunit 4-like.
   
 
 0.668
LOC100186564
Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily.
   
 0.653
H2XUS5_CIOIN
Uncharacterized protein.
   
 0.653
LOC100181113
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 
 0.613
F6UY72_CIOIN
Uncharacterized protein.
      
 0.577
LOC100176470
Brix domain-containing protein.
   
    0.552
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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