STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6RZ45_CIOINUncharacterized protein. (591 aa)    
Predicted Functional Partners:
F6YGJ7_CIOIN
Uncharacterized protein; Belongs to the peptidase C19 family.
    
 0.996
ckn1
Cockayne syndrome 1 homolog.
    
 0.992
F7ANR5_CIOIN
CPSF_A domain-containing protein.
    
 0.890
H2XXZ3_CIOIN
Uncharacterized protein.
    
 0.869
LOC100175879
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.867
F6SBF1_CIOIN
Uncharacterized protein.
     
 0.819
F6PIR1_CIOIN
USP domain-containing protein; Belongs to the peptidase C19 family.
    
 0.794
LOC100182516
RING-box protein 1.
    
 0.784
LOC100179498
DNA repair protein complementing XP-A cells homolog.
     
 0.748
r27a
R27a protein isoform X1.
    
 0.689
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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