STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6RYR1_CIOINFGGY_N domain-containing protein. (238 aa)    
Predicted Functional Partners:
LOC100183886
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.808
LOC100184510
PCI domain-containing protein.
   
 0.748
F6YHS8_CIOIN
PCI domain-containing protein.
   
 0.728
LOC100186374
26S proteasome non-ATPase regulatory subunit 11.
   
 0.721
F7BLS5_CIOIN
PCI domain-containing protein.
   
 0.721
F6UXR3_CIOIN
26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.
   
 0.720
F6QS20_CIOIN
VWFA domain-containing protein.
   
 0.720
LOC100184104
PCI domain-containing protein.
   
 0.714
F6UMP0_CIOIN
RPN13_C domain-containing protein.
   
 0.702
F7A955_CIOIN
Proteasome subunit beta.
   
 0.693
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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