Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
moxTranscription factor protein. (176 aa)    
Predicted Functional Partners:
pax1/9
Transcription factor protein.
    
 
 0.856
H2Y1A0_CIOIN
Uncharacterized protein.
      
 0.569
pbx
Homeobox domain-containing protein.
    
 0.561
LOC100177747
Nuclear pore protein.
      
 0.521
F6UNB7_CIOIN
ANAPC5 domain-containing protein.
      
 0.518
Hh1
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 
 0.516
Hh2
Uncharacterized protein.
    
 
 0.516
srf
Transcription factor protein.
    
 
 0.510
LOC100184556
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
 
 0.431
Gli
Uncharacterized protein.
    
 
 0.429
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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