Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180520Uncharacterized protein. (348 aa)    
Predicted Functional Partners:
LOC100175824
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.986
LOC100176960
Uncharacterized protein.
    
 
 0.982
H2XL08_CIOIN
HIT-type domain-containing protein.
   
 
 0.979
LOC100185829
Uncharacterized protein.
    
 
 0.979
LOC100182908
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.971
Hsignallingt1
Uncharacterized protein.
    
 
 0.965
F7BFG7_CIOIN
GYF domain-containing protein.
   
 
 0.964
LOC100187353
Uncharacterized protein.
    
 
 0.964
LOC100183839
U5 small nuclear ribonucleoprotein 40 kDa protein.
    
 
 0.947
F6W3V6_CIOIN
RRM domain-containing protein.
      
 0.823
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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