STRINGSTRING
rhamm protein (Ciona intestinalis) - STRING interaction network
"rhamm" - Hyaluronan-mediated motility receptor in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhammHyaluronan-mediated motility receptor (779 aa)    
Predicted Functional Partners:
ENSCING00000009020
Uncharacterized protein (496 aa)
     
  0.812
ENSCING00000002874
Uncharacterized protein (435 aa)
     
    0.726
ENSCING00000005978
Uncharacterized protein (180 aa)
     
 
    0.724
ENSCING00000023572
Uncharacterized protein (365 aa)
     
 
    0.704
ENSCING00000002263
Uncharacterized protein (936 aa)
     
 
    0.684
ENSCING00000003627
Uncharacterized protein (466 aa)
     
 
    0.655
ENSCING00000000139
Uncharacterized protein (294 aa)
     
  0.649
ENSCING00000004839
Uncharacterized protein (649 aa)
     
 
  0.623
ENSCING00000019614
Uncharacterized protein (189 aa)
       
    0.615
ENSCING00000009290
Uncharacterized protein (363 aa)
         
  0.614
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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