STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhammHyaluronan-mediated motility receptor. (779 aa)    
Predicted Functional Partners:
Jnk
Mitogen-activated protein kinase.
    
 0.661
F6U7X2_CIOIN
PIPK domain-containing protein.
      
 0.617
LOC100185652
Mre11_DNA_bind domain-containing protein; Belongs to the MRE11/RAD32 family.
   
  0.551
F6QHZ5_CIOIN
FHA domain-containing protein.
    
  0.510
F6RC10_CIOIN
Uncharacterized protein.
   
 0.479
LOC100176117
Uncharacterized protein LOC100176117.
   
 0.471
H2XTY4_CIOIN
Uncharacterized protein.
   
 0.471
H2XWH9_CIOIN
Protein kinase domain-containing protein.
   
 0.470
F7AB73_CIOIN
Uncharacterized protein.
   
 0.467
LOC100184552
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.454
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.