F6XWE7_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6XWE7_CIOIN

Serine/threonine-protein kinase PLK. (754 aa)

Predicted Functional Partners:

F7B1X4_CIOIN

0.947

H2XWH9_CIOIN

0.933

LOC100187303

0.913

F6TJJ7_CIOIN

0.905

F7AQS5_CIOIN

0.889

H2XKH3_CIOIN

0.888

F7A0P0_CIOIN

0.866

F6UNP2_CIOIN

0.865

LOC100180856

0.855

H2XRK6_CIOIN

0.854

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6TJJ7_CIOIN	F6UNP2_CIOIN	ENSCINP00000007493	ENSCINP00000001981	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.865
F6TJJ7_CIOIN	F6XWE7_CIOIN	ENSCINP00000007493	ENSCINP00000015359	Uncharacterized protein.	Serine/threonine-protein kinase PLK.	0.905
F6TJJ7_CIOIN	F7A0P0_CIOIN	ENSCINP00000007493	ENSCINP00000000208	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.866
F6TJJ7_CIOIN	F7AQS5_CIOIN	ENSCINP00000007493	ENSCINP00000010143	Uncharacterized protein.	Peptidase C50 domain-containing protein.	0.889
F6TJJ7_CIOIN	F7B1X4_CIOIN	ENSCINP00000007493	ENSCINP00000012774	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.947
F6TJJ7_CIOIN	H2XKH3_CIOIN	ENSCINP00000007493	ENSCINP00000030155	Uncharacterized protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.888
F6TJJ7_CIOIN	H2XRK6_CIOIN	ENSCINP00000007493	ENSCINP00000032290	Uncharacterized protein.	HORMA domain-containing protein.	0.854
F6TJJ7_CIOIN	H2XWH9_CIOIN	ENSCINP00000007493	ENSCINP00000034013	Uncharacterized protein.	Protein kinase domain-containing protein.	0.933
F6TJJ7_CIOIN	LOC100180856	ENSCINP00000007493	ENSCINP00000027219	Uncharacterized protein.	Rad21_Rec8 domain-containing protein.	0.855
F6TJJ7_CIOIN	LOC100187303	ENSCINP00000007493	ENSCINP00000007280	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.913
F6UNP2_CIOIN	F6TJJ7_CIOIN	ENSCINP00000001981	ENSCINP00000007493	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.865
F6UNP2_CIOIN	F6XWE7_CIOIN	ENSCINP00000001981	ENSCINP00000015359	WD_REPEATS_REGION domain-containing protein.	Serine/threonine-protein kinase PLK.	0.865
F6UNP2_CIOIN	F7A0P0_CIOIN	ENSCINP00000001981	ENSCINP00000000208	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.909
F6UNP2_CIOIN	F7AQS5_CIOIN	ENSCINP00000001981	ENSCINP00000010143	WD_REPEATS_REGION domain-containing protein.	Peptidase C50 domain-containing protein.	0.774
F6UNP2_CIOIN	F7B1X4_CIOIN	ENSCINP00000001981	ENSCINP00000012774	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
F6UNP2_CIOIN	H2XKH3_CIOIN	ENSCINP00000001981	ENSCINP00000030155	WD_REPEATS_REGION domain-containing protein.	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.	0.995
F6UNP2_CIOIN	H2XRK6_CIOIN	ENSCINP00000001981	ENSCINP00000032290	WD_REPEATS_REGION domain-containing protein.	HORMA domain-containing protein.	0.931
F6UNP2_CIOIN	H2XWH9_CIOIN	ENSCINP00000001981	ENSCINP00000034013	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.934
F6UNP2_CIOIN	LOC100180856	ENSCINP00000001981	ENSCINP00000027219	WD_REPEATS_REGION domain-containing protein.	Rad21_Rec8 domain-containing protein.	0.681
F6UNP2_CIOIN	LOC100187303	ENSCINP00000001981	ENSCINP00000007280	WD_REPEATS_REGION domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.497