F6X7U3_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6X7U3_CIOIN

LisH domain-containing protein. (1112 aa)

Predicted Functional Partners:

F6ZS66_CIOIN

0.837

LOC100186064

0.792

F6YAD0_CIOIN

0.742

LOC100178929

0.702

H2XX64_CIOIN

0.695

F6XVF3_CIOIN

0.688

F6WZS8_CIOIN

0.645

H2XWM6_CIOIN

0.596

F7A9M5_CIOIN

0.594

F6XWB1_CIOIN

0.592

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6WZS8_CIOIN	F6X7U3_CIOIN	ENSCINP00000005757	ENSCINP00000015377	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	LisH domain-containing protein.	0.645
F6WZS8_CIOIN	H2XX64_CIOIN	ENSCINP00000005757	ENSCINP00000034248	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	AB hydrolase-1 domain-containing protein.	0.874
F6WZS8_CIOIN	LOC100178929	ENSCINP00000005757	ENSCINP00000010125	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	Serine/threonine-protein phosphatase.	0.957
F6WZS8_CIOIN	LOC100186064	ENSCINP00000005757	ENSCINP00000008274	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	Serine/threonine-protein phosphatase.	0.963
F6X7U3_CIOIN	F6WZS8_CIOIN	ENSCINP00000015377	ENSCINP00000005757	LisH domain-containing protein.	Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.	0.645
F6X7U3_CIOIN	F6XVF3_CIOIN	ENSCINP00000015377	ENSCINP00000010785	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.688
F6X7U3_CIOIN	F6XWB1_CIOIN	ENSCINP00000015377	ENSCINP00000003389	LisH domain-containing protein.	Uncharacterized protein.	0.592
F6X7U3_CIOIN	F6YAD0_CIOIN	ENSCINP00000015377	ENSCINP00000014181	LisH domain-containing protein.	DUF4042 domain-containing protein.	0.742
F6X7U3_CIOIN	F6ZS66_CIOIN	ENSCINP00000015377	ENSCINP00000028204	LisH domain-containing protein.	Uncharacterized protein.	0.837
F6X7U3_CIOIN	F7A9M5_CIOIN	ENSCINP00000015377	ENSCINP00000011661	LisH domain-containing protein.	Uncharacterized protein.	0.594
F6X7U3_CIOIN	H2XWM6_CIOIN	ENSCINP00000015377	ENSCINP00000034060	LisH domain-containing protein.	DUF1741 domain-containing protein.	0.596
F6X7U3_CIOIN	H2XX64_CIOIN	ENSCINP00000015377	ENSCINP00000034248	LisH domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.695
F6X7U3_CIOIN	LOC100178929	ENSCINP00000015377	ENSCINP00000010125	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.702
F6X7U3_CIOIN	LOC100186064	ENSCINP00000015377	ENSCINP00000008274	LisH domain-containing protein.	Serine/threonine-protein phosphatase.	0.792
F6XVF3_CIOIN	F6X7U3_CIOIN	ENSCINP00000010785	ENSCINP00000015377	Serine/threonine-protein phosphatase.	LisH domain-containing protein.	0.688
F6XWB1_CIOIN	F6X7U3_CIOIN	ENSCINP00000003389	ENSCINP00000015377	Uncharacterized protein.	LisH domain-containing protein.	0.592
F6XWB1_CIOIN	F6YAD0_CIOIN	ENSCINP00000003389	ENSCINP00000014181	Uncharacterized protein.	DUF4042 domain-containing protein.	0.563
F6YAD0_CIOIN	F6X7U3_CIOIN	ENSCINP00000014181	ENSCINP00000015377	DUF4042 domain-containing protein.	LisH domain-containing protein.	0.742
F6YAD0_CIOIN	F6XWB1_CIOIN	ENSCINP00000014181	ENSCINP00000003389	DUF4042 domain-containing protein.	Uncharacterized protein.	0.563
F6ZS66_CIOIN	F6X7U3_CIOIN	ENSCINP00000028204	ENSCINP00000015377	Uncharacterized protein.	LisH domain-containing protein.	0.837